final basiclly

mcp_server.py

@@ -1,26 +1,26 @@
 import os
 os.environ["MCP_ALLOW_ALL_ORIGINS"] = "1"
 
+import re
 import json
+import numpy as np
 from pathlib import Path
 from sentence_transformers import SentenceTransformer
 from qdrant_client import QdrantClient
 from qdrant_client.models import Filter, FieldCondition, MatchValue
 from mcp.server.fastmcp import FastMCP
-# Add this right after the FastMCP import, before anything else
 from mcp.server import streamable_http
-streamable_http.ALLOWED_ORIGINS = None  # try this first
+streamable_http.ALLOWED_ORIGINS = None
 
-# If that doesn't work, patch the actual check function:
 import mcp.server.streamable_http as _sh
 _sh.is_valid_origin = lambda origin, allowed: True
 import uvicorn
 from starlette.middleware.cors import CORSMiddleware
 from starlette.middleware.base import BaseHTTPMiddleware
 from starlette.requests import Request
+import httpx
 from mcp.server.transport_security import TransportSecuritySettings, TransportSecurityMiddleware
 
-# Monkey-patch to disable DNS rebinding protection entirely
 TransportSecurityMiddleware.__init__ = lambda self, settings=None: setattr(
     self, "settings", TransportSecuritySettings(enable_dns_rebinding_protection=False)
 )
@@ -40,40 +40,47 @@ with open(project_root / "data" / "processed" / "parent_lookup.json") as f:
 # ── Config ─────────────────────────────────────────────────────────────────
 TOP_K = 10
 
-SYSTEM_PROMPT = """You are an expert AP US History tutor helping a student ace their APUSH exam.
 
-You have access to the search_textbook tool. Call it before answering ANY history question.
-
-ANSWERING:
-- Cite inline like (Ch5, p.153) after every specific claim
-- **Bold** key terms, dates, names, and critical facts
-- Correct false premises directly — don't reinforce wrong assumptions
-- If the textbook doesn't cover it, answer from general knowledge and prefix with "Outside textbook:"
-
-FORMAT — match the question type:
-- One word/fact → one word
-- SAQ → 1 focused paragraph, dense with evidence
-- LEQ/DBQ → full essay: context, thesis, body paragraphs with evidence, nuance
-- General question → clear prose, as long as needed
-
-END EVERY RESPONSE WITH:
----
-**Sources Used:**
-[list every source from the tool output with chapter, section, page, and score]
-**Retrieval Confidence:** HIGH/MEDIUM/LOW"""
 
 # ── Embed ──────────────────────────────────────────────────────────────────
-def embed_query(query: str) -> list[float]:
+def embed_query(query: str) -> np.ndarray:
     return model.encode(
         f"search_query: {query}",
         normalize_embeddings=True,
-    ).tolist()
+    )
+
+# ── Highlight ──────────────────────────────────────────────────────────────
+def highlight_passage(query_emb: np.ndarray, passage: str) -> str:
+    sentences = [s.strip() for s in re.split(r'(?<=[.!?])\s+', passage) if len(s.strip()) > 20]
+    if not sentences:
+        return passage
+
+    sent_embs = model.encode(
+        [f"search_document: {s}" for s in sentences],
+        normalize_embeddings=True,
+        batch_size=32,
+        show_progress_bar=False,
+    )
+
+    scores    = sent_embs @ query_emb
+    top_n     = min(3, len(scores))
+    threshold = float(sorted(scores)[-top_n])
+
+    highlighted = passage
+    for sent, score in zip(sentences, scores):
+        if float(score) >= threshold:
+            if f"**{sent}**" not in highlighted:
+                highlighted = highlighted.replace(sent, f"**{sent}**")
+
+    return highlighted
 
 # ── Retrieve ───────────────────────────────────────────────────────────────
 def retrieve(query: str) -> dict:
+    query_emb = embed_query(query)
+
     hits = qdrant.query_points(
         collection_name=COLLECTION,
-        query=embed_query(query),
+        query=query_emb.tolist(),
         limit=TOP_K,
         query_filter=Filter(
             must_not=[
@@ -83,12 +90,7 @@ def retrieve(query: str) -> dict:
     ).points
 
     top_score = hits[0].score if hits else 0
-    if top_score >= 0.70:
-        confidence = "HIGH"
-    elif top_score >= 0.50:
-        confidence = "MEDIUM"
-    else:
-        confidence = "LOW"
+    confidence = "HIGH" if top_score >= 0.70 else "MEDIUM" if top_score >= 0.50 else "LOW"
 
     seen_parents = set()
     unique_hits  = []
@@ -105,13 +107,15 @@ def retrieve(query: str) -> dict:
         pid         = h.payload["parent_id"]
         parts       = parent_lookup.get(pid, [])
         full_text   = "\n\n".join(p["text"] for p in parts)
+        highlighted = highlight_passage(query_emb, full_text)
+
         sources.append({
             "score":         h.score,
             "chapter_num":   h.payload["chapter_num"],
             "chapter_title": h.payload["chapter_title"],
             "section_title": h.payload["section_title"],
             "textbook_page": h.payload["textbook_page"],
-            "text":          full_text,
+            "text":          highlighted,
         })
 
     return {
@@ -121,10 +125,9 @@ def retrieve(query: str) -> dict:
         "sources":    sources,
     }
 
-# ── Origin bypass middleware ────────────────────────────────────────────────
+# ── Origin bypass middleware ───────────────────────────────────────────────
 class AllowAllOriginsMiddleware(BaseHTTPMiddleware):
     async def dispatch(self, request: Request, call_next):
-        # Spoof origin so FastMCP's internal check passes
         request._headers = request.headers.mutablecopy()
         request._headers["origin"] = "http://127.0.0.1:11434"
         return await call_next(request)
@@ -136,9 +139,10 @@ mcp = FastMCP("APUSH Tutor")
 def search_textbook(query: str) -> str:
     """
     Search the AP US History textbook for relevant passages.
-    Use this for any question about US history before answering.
-    Always cite sources inline and list all sources at the end.
-    Bold or emphasize the most important phrases in your answer.
+    Call this before answering ANY US history question.
+    For broad topics call it multiple times with different search angles.
+    Returns passages with the most relevant sentences bolded.
+    Always cite inline (Ch#, p.###) and list sources at the end.
     """
     retrieved = retrieve(query)
 
@@ -159,10 +163,6 @@ def search_textbook(query: str) -> str:
 
     return header + passages + footer
 
-@mcp.prompt()
-def system_prompt() -> str:
-    """The APUSH tutor system prompt."""
-    return SYSTEM_PROMPT
     
 # ── Run ────────────────────────────────────────────────────────────────────
 if __name__ == "__main__":

notebooks/query.ipynb

@@ -1021,7 +1021,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": null,
    "id": "d87d2add",
    "metadata": {},
    "outputs": [
@@ -1099,6 +1099,17 @@
      },
      "metadata": {},
      "output_type": "display_data"
+    },
+    {
+     "ename": "",
+     "evalue": "",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[1;31mThe Kernel crashed while executing code in the current cell or a previous cell. \n",
+      "\u001b[1;31mPlease review the code in the cell(s) to identify a possible cause of the failure. \n",
+      "\u001b[1;31mClick <a href='https://aka.ms/vscodeJupyterKernelCrash'>here</a> for more info. \n",
+      "\u001b[1;31mView Jupyter <a href='command:jupyter.viewOutput'>log</a> for further details."
+     ]
     }
    ],
    "source": [